杉本班
杉本班・論文発表
Chen, Y., Ince, Y.Ç., Kawamura, A., Favero, D.S., Suzuki, T., and *Sugimoto, K.
ELONGATED HYPOCOTYL5-mediated light signaling promotes shoot regeneration in Arabidopsis thaliana.
Plant Physiol., in press (2024) Linkプレスリリース
*Tonosaki, K., Susaki, D., Morinaka, H., Ono, A., Nagata, H., Furuumi, H., Nonomura, K.-I., Sato, Y., Sugimoto, K., Comai, L., Hatakeyama, K., *Kawakatsu, T., and *Kinoshita, T.
Multilayered epigenetic control of persistent and stage-specific imprinted genes in rice endosperm.
Nature Plants, 10, 1231-1245. (2024) Link
*Matsunaga, S., and Ito, N.
Nuclear pores beyond macromolecule channels.
Nature Plants, 10, 842-843 (2024) Link
Kikuchi, S., Sakamoto, T., Matsunaga, S., Sugiyama, M., and *Iwamoto, A.
Plant chromosome polytenization contributes to suppression of the root growth in high-polyploids.
J. Exp. Bot., in press (2024) Link
Sakamoto, T., Ikematsu, S., Nakayama, H., Mandakova, T., Gohari, G., Sakamoto, T., Li, G., Hou, H., Matsunaga, S., Lysak, M.A., and *Kimura, S.
A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence.
Commun Biol., 7, 431 (2024) Link
Ito, N., Sakamoto, T., Oko, Y., Sato, H., Hanamata, S., Sakamoto, Y., and *Matsunaga, S.
Nuclear pore complex proteins are involved in centromere distribution.
iScience, 27, 108855 (2024) Link
Handa, N. and *Matsunaga, S.
Regeneration favors the epigenetically primed state in the callus or the stem cell.
Cytologia, 89, 1-3 (2024) Link
Ogura, N., Sasagawa, Y., Ito, T., Tameshige, T., Kawai, S., Sano, M., Doll, Y., Iwase, A., Kawamura, A., Suzuki, T., Nikaido, I., Sugimoto, K., and *Ikeuchi, M.
WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus.
Sci. Adv., 9, eadg6983 (2023) Link
Wang, N., Wang, Z., Tzourtzou, S., Wang, X., Bi, X., Leimeister, J., Xu, L., Sakamoto, T., Matsunaga, S., Schaller, A., Jiang, H., and *Liu, C.
The plant nuclear lamina disassembles to regulate genome folding in stress conditions.
Nature Plants, 9, 1081-1093 (2023) Link
*Ince, Y.Ç., and *Sugimoto, K.
Illuminating the path to shoot meristem regeneration: Molecular insights into reprogramming cells into stem cells.
Curr. Opin. Plant Biol., 76, 102452 (2023) Link
Chen, Y., *Hung, F.-Y., and *Sugimoto, K.
Epigenomic reprogramming in plant regeneration: Locate before you modify.
Curr. Opin. Plant Biol., 75, 102415 (2023) Link
Sakamoto, T., and *Matsunaga, S.
Chromatin dynamics and subnuclear gene positioning for transcriptional regulation.
Curr. Opin. Plant Biol., 75, 102431 (2023) Link
*Morinaka, H., Sakamoto, Y., Iwase, A., and *Sugimoto, K.
How do plants reprogramme the fate of differentiated cells?
Curr. Opin. Plant Biol., 74, 102377 (2023) Link
Takusagawa, M., Misumi, O., Nozaki, H., Kato, S., Maruyama, S., Tsujimoto-inui, Y., Yagisawa, F., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., and *Matsunaga, S.
Complete mitochondrial and chloroplast DNA sequences of the freshwater green microalga Medakamo hakoo.
Genes Genet. System., 98, 353-360 (2023) Link
Liang, B., Sato, H., and *Matsunaga, S.
Genome editing based on in vitro-assembled ribonucleoproteins in plants.
Cytologia, 88, 283-288 (2023) Link
Takatsuka, H., Sasaki, A., Takahashi, N., Shibata, M., Sugimoto, K., Tanaka, M., Seki, M., and *Umeda, M.
Cytokinin signaling promotes root hair growth by directly regulating RSL4 expression.
J. Exp. Bot., 74, 3579-3594 (2023) Link
Tanaka, H., Hashimoto, N., Kawai, S., Yumoto, E., Shibata, K., Tameshige, T., Yamamoto, Y., Sugimoto, K., Asahina, M., and *Ikeuchi, M.
Auxin-induced WUSCHEL-RELATED HOMEOBOX13 mediates asymmetric activity of callus formation upon cutting.
Plant Cell Physiol., 64, 305-316. (2023) Link
Hung, F.Y., Feng, Y.R., Hsin, K.T., Shih, Y.H., Chang, C.H., Zhong, W.J., Lai, Y.C., Xu, Y., Yang, S., Sugimoto, K., Cheng, Y.S., and *Wu, K.
Arabidopsis histone H3 lysine 9 methyltransferases KYP/SUVH5/6 are involved in leaf development by interacting with AS1-AS2 to repress KNAT1 and KNAT2.
Commun. Biol., 6, 219 (2023) Link
Temman, H., Sakamoto, T., Ueda, M., Sugimoto, K., Migihashi, M., Yamamoto, K., Tsujimoto-Inui, Y., Sato, H., Shibuta, M. K., Nishino, N., Nakamura, T., Shimada, H., Taniguchi, Y. Y., Takeda, S., Aida, M., Suzuki, T., Seki, M., and *Matsunaga, S.
Histone deacetylation regulates de novo shoot regeneration.
PNAS Nexus, 2, pdad002 (2023) Linkプレスリリース
Kikuchi, S., Sakamoto, T., Matsunaga, S., and *Iwamoto, A.
Novel whole-mount FISH analysis for intact root of Arabidopsis thaliana with spatial reference to 3D visualization.
J. Plant Res., 136, 423–428 (2023) Link
Kato, S., Misumi, O., Maruyama, S., Nozaki, H., Tsujimoto-Inui, Y., Takusagawa, M., Suzuki, S., Kuwata, K., Noda, S., Ito, N., Okabe, Y., Sakamoto, T., Yagisawa, F., Matsunaga, T. M., Matsubayashi, Y., Yamaguchi, H., Kawachi, M., Kuroiwa, H., *Kuroiwa, T., and *Matsunaga, S.
Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo.
Commun. Biol., 6, 89 (2023) Linkプレスリリース
Li, Y., and *Matsunaga, S.
Various strategies for improved signal-to-noise ratio in CRISPR-based live cell imaging.
Cytologia, 88, 3-7 (2023) Link
Takatsuka, H., Nomoto, Y., Yamada, K., Mineta, K., Breuer, C., Ishida, T., Yamagami, A., Sugimoto, K., Nakano, T., and *Ito, M.
MYB3R-SCL28-SMR module with a role in cell size control negatively regulates G2 progression in Arabidopsis
Plant Signal. Behav., e2153209 (2022) Link
*Morinaka, H., Coleman, D., Sugimoto, K., and *Iwase, A.
Molecular mechanisms of plant regeneration from differentiated cells: approaches from historical tissue culture systems.
Plant Cell Physiol., 64, 297-304 (2022) Link
Jacques, C.N., *Favero, D.S., Kawamura, A., Suzuki, T., Sugimoto, K., and *Neff, M.M.
SUPPRESSOR OF PHYTOCHROME B-4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days.
BMC Plant Biol., 22, 399 (2022) Link
Okabe, Y., and *Matsunaga, S.
Natural and artificial photosymbiosis in vertebrates.
Cytologia, 87, 69-72 (2022) Link
Mori, S., Sumiya, N., and *Matsunaga, S.
Nucleomorph: A fascinating remnant of endosymbiosis.
Cytologia, 87, 203-208 (2022) Link
*Matsunaga S.
Transcription factors linking the perception of mechanical stress at the cell wall with the responsive gene network.
Mol. Plant, 15, 1662–1663 (2022) Link
Sakamoto, Y., Kawamura, A., Suzuki, T., Segami, S., Maeshima, M., Polyn, S., De Veylder, L., and *Sugimoto, K.
Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells.
Plant Cell, 34, 4348-4365 (2022) Linkプレスリリース
*Sakamoto, T., Sakamoto, Y., Grob, S., Slane, D., Yamashita, T., Ito, N., Oko, Y., Sugiyama, T., Higaki, T., Hasezawa, S., Tanaka, M., Matsui, A., Seki, M., Suzuki, T., Grossniklaus, U., and *Matsunaga, S.
Two-step regulation of centromere distribution by condensin II and the nuclear envelope proteins.
Nature Plants, 8, 940-953 (2022) Linkプレスリリース
様々な環境に対応する遺伝子発現を正常に実行するためには、細胞核内のDNAが3次元的に適切な空間配置ポジションをとることが重要であることが示唆されています。シロイヌナズナの変異体を使用してセントロメアを分散配置させるタンパク質群（CII-LINC複合体およびCRWN）の同定に成功し、二つの分子経路が関与することを明らかにしました。1885年以来、130年以上、謎であったセントロメアの空間配置パターンの分子メカニズムが明らかになりました。また、正常なセントロメアの空間配置ができなくなると、DNA損傷ストレスを受けた時に器官成長が悪くなることがわかりました。これは、生物が環境ストレスに対応するためには、細胞核内の適切なDNAの空間配置が必要なことを示唆しています。
*Shibata, M., Favero, D., Takebayashi, R., Takebayashi, A., Kawamura, A., Rymen, B, Hosokawa, Y., and *Sugimoto, K.
Trihelix transcription factors GTL1 and DF1 prevent aberrant root hair formation in an excess nutrient condition.
New Phytol., 235, 1426-1441 (2022) Link
Nomoto, Y., Takatsuka, H., Yamada, K., Suzuki, T., Suzuki, T., Huang, Y., Latrasse, D., An, J., Gombos, M., Breuer, C., Ishida, T., Maeo, K., Imamura, M., Yamashino, T., Sugimoto, K., Magyar, Z., Bögre, L., Raynaud, C., Benhamed, M., and *Ito, M.
A hierarchical transcriptional network activates specific CDK inhibitors that regulate G2 to control cell size and number in Arabidopsis.
Nature Commun., 13, 1660 (2022) Link
Méteignier, L.V., Lecampion, C., Velay, F., Vriet, C., Dimnet, L., Rougée, M., Breuer, C., Soubigou-Taconnat, L., Sugimoto, K., Barneche, F., and *Laloi, C.
Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading.
Proc. Natl. Acad. Sci. USA, 119, e2001290119 (2022) Link
Serivichyaswat, P.T., Bartusch, K., Leso, M., Musseau, C., Iwase, A., Chen, Y., Sugimoto, K., Quint, M., and *Melnyk, C.W.
High temperature perception in leaves promotes vascular regeneration in distance tissues.
Development, 149, dev200079 (2022) Link
Sato, M., Akashi, H., Sakamoto, Y., Matsunaga, S., and *Tsuji, H.
Whole-tissue three-dimensional imaging of rice at single-cell resolution.
Int. J. Mol. Sci., 23, 40 (2022) Link
*Kim, J.S., Sakamoto, Y., Takahashi, F., Shibata, M., Urano, K., Matsunaga, S., Yamaguchi-Shinozaki, K., and *Shinozaki, K.
Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity.
Proc. Natl. Acad. Sci. USA, 119, e2120219119 (2022) Linkプレスリリース
*Roeder, A.H.K., Otegui, M.S., Dixit, R., Anderson, C.T., Faulkner, C., Zhang, Y., Harrison, M.J., Kirchhelle, C., Goshima, G., Coate, J.E., Doyle, J.J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D.W., Boudaoud, A., and Messina, C.
Fifteen compelling open questions in plant cell biology.
Plant Cell, 34, 72-102 (2022) Link
Lambolez, A., Kawamura, A., Takahashi, T., Rymen, B., Iwase, A., Favero, D.S., Ikeuchi, M., Suzuki, T., Cortijo, S., Jaeger, K.E., Wigge, P.A., and *Sugimoto, K.
Warm temperature promotes shoot regeneration in Arabidopsis thaliana.
Plant Cell Physiol., 63, 618-634 (2022) Link
*Iwase, A., Takebayashi, A., Aoi, Y., Favero, D.S., Watanabe, S., Seo, M., Kasahara, H., and *Sugimoto, K.
4-Phenylbutyric acid promotes plant regeneration as an auxin by being converted to phenylacetic acid via an IBR3-independent pathway.
Plant Biotechnol., 39, 51-58 (2022) Link
*Ikeuchi, M., Iwase, A., Ito, T., Tanaka, H., Favero, D.S., Kawamura, A., Sakamoto, S., Wakazaki, M., Tameshige, T., Fujii, H., Hashimoto, N., Suzuki, T., Hotta, K., Toyooka, K., Mitsuda, N., and Sugimoto, K.
Wound-inducible WUSCHEL-RELATED HOMEOBOX 13 is required for callus growth and organ reconnection.
Plant Physiol., 188, 425-441 (2022) Link
*Sugimoto, K., and *Nowack, M.K.
Plant development meets climate emergency – it's time to plant an apple tree.
Curr. Opin. Plant Biol., 65, 102175 (2022) Link
Sakamoto, Y., Ishimoto, A., Sakai, Y., Sato, M., Nishihama, R., Abe, K., Sano, Y., Furuichi, T., Tsuji, H., Kohchi, T., and *Matsunaga, S.
Improved clearing method contributes to deep imaging of plant organs.
Commun. Biol., 5, 12 (2022) Linkプレスリリース
Morinaka, H., Mamiya, A., Tamaki, H., Iwamoto, A., Suzuki, T., Kawamura, A., Ikeuchi, M., Iwase, A., Higashiyama, T., Sugimoto, K., and *Sugiyama, M.
Transcriptome dynamics of epidermal reprogramming during direct shoot regeneration in Torenia fournieri.
Plant Cell Physiol., 62, 1335-1354 (2021) Link
*Iwase, A., Kondo, Y., Laohavisit, A., Takebayashi, A., Ikeuchi, M., Matsuoka, K., Asahina, M., Mitsuda, N., Shirasu, K., Fukuda, H., and *Sugimoto, K.
WIND transcription factors orchestrate wound-induced callus formation, vascular reconnection and defense response in Arabidopsis.
New Phytol., 232, 734-752 (2021) Linkプレスリリース
Yagi, N., Kato, T., Matsunaga, S., Ehrhardt, D.W., *Nakamura, M., and *Hashimoto T.
An anchoring complex recruits katanin for microtubule severing at the plant cortical nucleation sites.
Nature Commun., 12, 3687 (2021) Link
Aoki, R., and *Matsunaga, S.
A photosynthetic animal: a sacoglossan sea slug that steals chloroplasts.
Cytologia, 86, 103-107 (2021) Link
Shibuta, M.K., Sakamoto, T., Yamaoka, T., Yoshikawa, M., Kasamatsu, S., Yagi, N., Fujimoto, S., Suzuki, T., Uchino, S., Sato, Y., Kimura, H., and *Matsunaga, S.
A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana.
Commun. Biol., 4, 580 (2021) Link, プレスリリース
Matsuo, T., Isosaka, T., Hayashi, Y., Tang, L., Doi, A., Yasuda, A., Hayashi, M., Lee, C.Y., Cao, L., Kutsuna, N., Matsunaga, S., Matsuda, T., Yao, I., Setou, M., Kanagawa, D., Higasa, K., Ikawa, M., *Liu, Q., *Kobayakawa, R., and *Kobayakawa, K.
Thiazoline-related innate fear stimuli orchestrate hypothermia and anti-hypoxia via sensory TRPA1 activation.
Nature Commun., 12, 2074 (2021) Link
Fujiwara, Y., Matsunaga, S., and *Sakamoto, T.
Next generation sequence-based technologies for analyzing DNA strand breaks.
Cytologia, 86, 3-9 (2021) Link
Martinez, C.C., Li, S., Woodhouse, M.R., Sugimoto, K., and *Shinha, N.R.
Spatial transcriptional signatures define margin morphogenesis along the proximal-distal and medio-lateral axes in tomato (Solanum lycopersicum) leaves.
Plant Cell, 33, 44-65 (2021) Link
Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., and *Nakasako, M.
Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free-electron laser.
Sci. Rep., 11, 3877 (2021) Link
Kawakubo, H., *Kamisuki, S., Suzuki, K., Carbonell, J. I., Saito, S., Murata, H., Tanabe, A., Hongo, A., Murakami, H., Matsunaga, S., Sakaguchi, K., Sahara, H., Sugawara, F., and Kuramochi, K.
SQAP, an acyl sulfoquinovosyl derivative, suppresses expression of histone deacetylase and induces cell death of cancer cells under hypoxic conditions.
Biosci. Biotech. Biochem., 85, 85-91 (2021) Link
Sakamoto, Y., Sato, M., Sato, Y., Harada, A., Suzuki, T., Goto, C., Tamura, K., Toyooka, K., Kimura, H., Ohkawa, Y., Hara-Nishimura, I., Takagi, S., and *Matsunaga, S.
Subnuclear gene positioning through lamina association affects copper tolerance.
Nature Commun., 11, 5914 (2020) Link, プレスリリース
遺伝子は3次元的にDNAがパッケージングされた細胞核内で、空間に配置されています。そのため、遺伝子が細胞核内の3次元的配置を変化させて、遺伝子発現のON/OFFを調節することが知られていましたが、その詳細なメカニズムは不明なままでした。細胞核内の遺伝子の３次元的配置を制御するタンパク質として、核膜裏打ちタンパク質CRWNを同定しました。また、蛍光イメージング、クロマチン挿入標識（CHIL）、蛍光in situ hybridization (FISH)を用いることで、外部環境の変化に応じて遺伝子の空間配置が変化することが明らかになりました。銅環境の変化に合わせて銅関連遺伝子の空間配置が変化し、銅関連遺伝子がCRWNに結合することで遺伝子の発現がONになることがわかりました。
Nishioka, S., Sakamoto, T., and *Matsunaga, S.
Roles of BRAHMA and its interacting partners in plant chromatin remodeling.
Cytologia, 85, 263-267 (2020) Link