MENU

杉本班

杉本班・論文発表

*Shibata, M., Favero, D., Takebayashi, R., Takebayashi, A., Kawamura, A., Rymen, B, Hosokawa, Y., and *Sugimoto, K.

rihelix transcription factors GTL1 and DF1 prevent aberrant root hair formation in an excess nutrient condition.

New Phytologist, in press (2022) Link


Serivichyaswat, P.T., Bartusch, K., Leso, M., Musseau, C., Iwase, A., Chen, Y., Sugimoto, K., Quint, M., and *Melnyk, C.W.

High temperature perception in leaves promotes vascular regeneration in distance tissues.

Development, 149, dev200079. (2022) Link


Sato, M., Akashi, H., Sakamoto, Y., Matsunaga, S., and *Tsuji, H.

Whole-tissue three-dimensional imaging of rice at single-cell resolution.

Int. J. Mol. Sci., 23, 40. (2022) Link


*Kim, J.S., Sakamoto, Y., Takahashi, F., Shibata, M., Urano, K., Matsunaga, S., Yamaguchi-Shinozaki, K., and *Shinozaki, K.

Arabidopsis TBP-ASSOCIATED FACTOR 12 ortholog NOBIRO6 controls root elongation with unfolded protein response cofactor activity.

Proc. Natl. Acad. Sci. USA, 119, e2120219119. (2022) Linkプレスリリース


*Roeder, A.H.K., Otegui, M.S., Dixit, R., Anderson, C.T., Faulkner, C., Zhang, Y., Harrison, M.J., Kirchhelle, C., Goshima, G., Coate, J.E., Doyle, J.J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D.W., Boudaoud, A., and Messina, C.

Fifteen compelling open questions in plant cell biology.

Plant Cell, 34, 72-102. (2022) Link


Lambolez, A., Kawamura, A., Takahashi, T., Rymen, B., Iwase, A., Favero, D.S., Ikeuchi, M., Suzuki, T., Cortijo, S., Jaeger, K.E., Wigge, P.A., and *Sugimoto, K.

Warm temperature promotes shoot regeneration in Arabidopsis thaliana.

Plant Cell Physiol., in press (2022) Link


*Iwase, A., Takebayashi, A., Aoi, Y., Favero, D.S., Watanabe, S., Seo, M., Kasahara, H., and *Sugimoto, K.

4-Phenylbutyric acid promotes plant regeneration as an auxin by being converted to phenylacetic acid via an IBR3-independent pathway.

Plant Biotechnol., in press (2022) Link


*Ikeuchi, M., Iwase, A., Ito, T., Tanaka, H., Favero, D.S., Kawamura, A., Sakamoto, S., Wakazaki, M., Tameshige, T., Fujii, H., Hashimoto, N., Suzuki, T., Hotta, K., Toyooka, K., Mitsuda, N., and Sugimoto, K.

Wound-inducible WUSCHEL-RELATED HOMEOBOX 13 is required for callus growth and organ reconnection.

Plant Physiol., 188, 425-441. (2022) Link


*Sugimoto, K., and *Nowack, M.K.

Plant development meets climate emergency – it's time to plant an apple tree.

Curr. Opin. Plant Biol., 65, 102175. (2022) Link


Sakamoto, Y., Ishimoto, A., Sakai, Y., Sato, M., Nishihama, R., Abe, K., Sano, Y., Furuichi, T., Tsuji, H., Kohchi, T., and *Matsunaga, S.

Improved clearing method contributes to deep imaging of plant organs.

Commun. Biol., 5, 12. (2022) Linkプレスリリース


Morinaka, H., Mamiya, A., Tamaki, H., Iwamoto, A., Suzuki, T., Kawamura, A., Ikeuchi, M., Iwase, A., Higashiyama, T., Sugimoto, K., and *Sugiyama, M.

Transcriptome dynamics of epidermal reprogramming during direct shoot regeneration in Torenia fournieri.

Plant Cell Physiol., 62, 1335-1354. (2021) Link


*Iwase, A., Kondo, Y., Laohavisit, A., Takebayashi, A., Ikeuchi, M., Matsuoka, K., Asahina, M., Mitsuda, N., Shirasu, K., Fukuda, H., and *Sugimoto, K.

WIND transcription factors orchestrate wound-induced callus formation, vascular reconnection and defense response in Arabidopsis.

New Phytol., 232, 734-752. (2021) Linkプレスリリース


Yagi, N., Kato, T., Matsunaga, S., Ehrhardt, D.W., *Nakamura, M., and *Hashimoto T.

An anchoring complex recruits katanin for microtubule severing at the plant cortical nucleation sites.

Nature Commun., 12, 3687 (2021) Link


Aoki, R., and *Matsunaga, S.

A photosynthetic animal: a sacoglossan sea slug that steals chloroplasts.

Cytologia, 86, 103-107 (2021) Link


Shibuta, M.K., Sakamoto, T., Yamaoka, T., Yoshikawa, M., Kasamatsu, S., Yagi, N., Fujimoto, S., Suzuki, T., Uchino, S., Sato, Y., Kimura, H., and *Matsunaga, S.

A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana.

Commun. Biol., 4, 580 (2021) Link, プレスリリース


Matsuo, T., Isosaka, T., Hayashi, Y., Tang, L., Doi, A., Yasuda, A., Hayashi, M., Lee, C.Y., Cao, L., Kutsuna, N., Matsunaga, S., Matsuda, T., Yao, I., Setou, M., Kanagawa, D., Higasa, K., Ikawa, M., *Liu, Q., *Kobayakawa, R., and *Kobayakawa, K.

Thiazoline-related innate fear stimuli orchestrate hypothermia and anti-hypoxia via sensory TRPA1 activation.

Nature Commun., 12, 2074 (2021) Link


Fujiwara, Y., Matsunaga, S., and *Sakamoto, T.

Next generation sequence-based technologies for analyzing DNA strand breaks.

Cytologia, 86, 3-9 (2021) Link


Martinez, C.C., Li, S., Woodhouse, M.R., Sugimoto, K., and *Shinha, N.R.

Spatial transcriptional signatures define margin morphogenesis along the proximal-distal and medio-lateral axes in tomato (Solanum lycopersicum) leaves.

Plant Cell, 33, 44-65 (2021) Link


Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., and *Nakasako, M.

Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free-electron laser.

Sci. Rep., 11, 3877 (2021) Link


Kawakubo, H., *Kamisuki, S., Suzuki, K., Carbonell, J. I., Saito, S., Murata, H., Tanabe, A., Hongo, A., Murakami, H., Matsunaga, S., Sakaguchi, K., Sahara, H., Sugawara, F., and Kuramochi, K.

SQAP, an acyl sulfoquinovosyl derivative, suppresses expression of histone deacetylase and induces cell death of cancer cells under hypoxic conditions.

Biosci. Biotech. Biochem., 85, 85-91 (2021) Link


環境変化に応じて遺伝子が細胞核内の空間配置を変化させる仕組みを解明

Sakamoto, Y., Sato, M., Sato, Y., Harada, A., Suzuki, T., Goto, C., Tamura, K., Toyooka, K., Kimura, H., Ohkawa, Y., Hara-Nishimura, I., Takagi, S., and *Matsunaga, S.

Subnuclear gene positioning through lamina association affects copper tolerance.

Nature Commun., 11, 5914 (2020) Link, プレスリリース

遺伝子は3次元的にDNAがパッケージングされた細胞核内で、空間に配置されています。そのため、遺伝子が細胞核内の3次元的配置を変化させて、遺伝子発現のON/OFFを調節することが知られていましたが、その詳細なメカニズムは不明なままでした。細胞核内の遺伝子の3次元的配置を制御するタンパク質として、核膜裏打ちタンパク質CRWNを同定しました。また、蛍光イメージング、クロマチン挿入標識(CHIL)、蛍光in situ hybridization (FISH)を用いることで、外部環境の変化に応じて遺伝子の空間配置が変化することが明らかになりました。銅環境の変化に合わせて銅関連遺伝子の空間配置が変化し、銅関連遺伝子がCRWNに結合することで遺伝子の発現がONになることがわかりました。


Nishioka, S., Sakamoto, T., and *Matsunaga, S.

Roles of BRAHMA and its interacting partners in plant chromatin remodeling.

Cytologia, 85, 263-267 (2020) Link